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Rcpp Paket in R nicht installieren ubuntu 14.04

2017-03-11 2 views
0

bitte helfen Sie mir dabei. Ich habe versucht, Rcpp mitRcpp Paket in R nicht installieren ubuntu 14.04

sudo apt-get install r-cran-rcpp

und von R-Studio und bekam den gleichen Fehler zu installieren:

> install.packages("Rcpp", dependencies=TRUE) 
Installing package into ‘/home/sukumar/R/x86_64-pc-linux-gnu-library/3.3’ 
(as ‘lib’ is unspecified) 
also installing the dependency ‘highlight’ 

trying URL 'http://cran.rstudio.com/src/contrib/highlight_0.4.7.tar.gz' 
Content type 'application/x-gzip' length 356443 bytes (348 KB) 
================================================== 
downloaded 348 KB 

trying URL 'http://cran.rstudio.com/src/contrib/Rcpp_0.12.9.tar.gz' 
Content type 'application/x-gzip' length 2372283 bytes (2.3 MB) 
================================================== 
downloaded 2.3 MB 

* installing *source* package ‘highlight’ ... 
** package ‘highlight’ successfully unpacked and MD5 sums checked 
** libs 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ASBeautifier.cpp -o ASBeautifier.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ASEnhancer.cpp -o ASEnhancer.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ASFormatter.cpp -o ASFormatter.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ASResource.cpp -o ASResource.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ASStreamIterator.cpp -o ASStreamIterator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Matcher.cpp -o Matcher.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Pattern.cpp -o Pattern.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ansigenerator.cpp -o ansigenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bbcodegenerator.cpp -o bbcodegenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c codegenerator.cpp -o codegenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c configurationreader.cpp -o configurationreader.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ctagsreader.cpp -o ctagsreader.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c datadir.cpp -o datadir.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c documentstyle.cpp -o documentstyle.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c elementstyle.cpp -o elementstyle.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c highlight_wrapper.cpp -o highlight_wrapper.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c htmlgenerator.cpp -o htmlgenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c languagedefinition.cpp -o languagedefinition.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c latexgenerator.cpp -o latexgenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c platform_fs.cpp -o platform_fs.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c preformatter.cpp -o preformatter.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c render.cpp -o render.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rtfgenerator.cpp -o rtfgenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stringtools.cpp -o stringtools.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stylecolour.cpp -o stylecolour.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c svggenerator.cpp -o svggenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c texgenerator.cpp -o texgenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c xhtmlgenerator.cpp -o xhtmlgenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c xmlgenerator.cpp -o xmlgenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c xterm256generator.cpp -o xterm256generator.o 
g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o highlight.so ASBeautifier.o ASEnhancer.o ASFormatter.o ASResource.o ASStreamIterator.o Matcher.o Pattern.o ansigenerator.o bbcodegenerator.o codegenerator.o configurationreader.o ctagsreader.o datadir.o documentstyle.o elementstyle.o highlight_wrapper.o htmlgenerator.o languagedefinition.o latexgenerator.o platform_fs.o preformatter.o render.o rtfgenerator.o stringtools.o stylecolour.o svggenerator.o texgenerator.o xhtmlgenerator.o xmlgenerator.o xterm256generator.o -L/usr/lib/R/lib -lR 
installing to /home/sukumar/R/x86_64-pc-linux-gnu-library/3.3/highlight/libs 
** R 
** inst 
** preparing package for lazy loading 
** help 
*** installing help indices 
** building package indices 
** testing if installed package can be loaded 
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
    unable to load shared object '/home/sukumar/R/x86_64-pc-linux-gnu-library/3.3/highlight/libs/highlight.so': 
    /home/sukumar/R/x86_64-pc-linux-gnu-library/3.3/highlight/libs/highlight.so: undefined symbol: _ZTVN10__cxxabiv117__class_type_infoE 
Error: loading failed 
Execution halted 
ERROR: loading failed 
* removing ‘/home/sukumar/R/x86_64-pc-linux-gnu-library/3.3/highlight’ 
Warning in install.packages : 
    installation of package ‘highlight’ had non-zero exit status 
* installing *source* package ‘Rcpp’ ... 
** package ‘Rcpp’ successfully unpacked and MD5 sums checked 
** libs 
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/  -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Date.cpp -o Date.o 
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/  -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Module.cpp -o Module.o 
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/  -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rcpp_init.cpp -o Rcpp_init.o 
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/  -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c api.cpp -o api.o 
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/  -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c attributes.cpp -o attributes.o 
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/  -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c barrier.cpp -o barrier.o 
g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o Rcpp.so Date.o Module.o Rcpp_init.o api.o attributes.o barrier.o -L/usr/lib/R/lib -lR 
installing to /home/sukumar/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/libs 
** R 
** inst 
** preparing package for lazy loading 
** help 
*** installing help indices 
** building package indices 
** installing vignettes 
** testing if installed package can be loaded 
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
    unable to load shared object '/home/sukumar/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/libs/Rcpp.so': 
    /home/sukumar/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/libs/Rcpp.so: undefined symbol: _ZTVN10__cxxabiv120__si_class_type_infoE 
Error: loading failed 
Execution halted 
ERROR: loading failed 
* removing ‘/home/sukumar/R/x86_64-pc-linux-gnu-library/3.3/Rcpp’ 
Warning in install.packages : 
    installation of package ‘Rcpp’ had non-zero exit status 

The downloaded source packages are in 
    ‘/tmp/RtmpsPMzSK/downloaded_packages’ 
> install.packages("Rcpp", dependencies=TRUE) 
Installing package into ‘/home/sukumar/R/x86_64-pc-linux-gnu-library/3.3’ 
(as ‘lib’ is unspecified) 
also installing the dependency ‘highlight’ 

trying URL 'http://cran.rstudio.com/src/contrib/highlight_0.4.7.tar.gz' 
Content type 'application/x-gzip' length 356443 bytes (348 KB) 
================================================== 
downloaded 348 KB 

trying URL 'http://cran.rstudio.com/src/contrib/Rcpp_0.12.9.tar.gz' 
Content type 'application/x-gzip' length 2372283 bytes (2.3 MB) 
================================================== 
downloaded 2.3 MB 

* installing *source* package ‘highlight’ ... 
** package ‘highlight’ successfully unpacked and MD5 sums checked 
** libs 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ASBeautifier.cpp -o ASBeautifier.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ASEnhancer.cpp -o ASEnhancer.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ASFormatter.cpp -o ASFormatter.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ASResource.cpp -o ASResource.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ASStreamIterator.cpp -o ASStreamIterator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Matcher.cpp -o Matcher.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Pattern.cpp -o Pattern.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ansigenerator.cpp -o ansigenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bbcodegenerator.cpp -o bbcodegenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c codegenerator.cpp -o codegenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c configurationreader.cpp -o configurationreader.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ctagsreader.cpp -o ctagsreader.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c datadir.cpp -o datadir.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c documentstyle.cpp -o documentstyle.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c elementstyle.cpp -o elementstyle.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c highlight_wrapper.cpp -o highlight_wrapper.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c htmlgenerator.cpp -o htmlgenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c languagedefinition.cpp -o languagedefinition.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c latexgenerator.cpp -o latexgenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c platform_fs.cpp -o platform_fs.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c preformatter.cpp -o preformatter.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c render.cpp -o render.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rtfgenerator.cpp -o rtfgenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stringtools.cpp -o stringtools.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stylecolour.cpp -o stylecolour.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c svggenerator.cpp -o svggenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c texgenerator.cpp -o texgenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c xhtmlgenerator.cpp -o xhtmlgenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c xmlgenerator.cpp -o xmlgenerator.o 
g++ -I/usr/share/R/include -DNDEBUG  -I. -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c xterm256generator.cpp -o xterm256generator.o 
g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o highlight.so ASBeautifier.o ASEnhancer.o ASFormatter.o ASResource.o ASStreamIterator.o Matcher.o Pattern.o ansigenerator.o bbcodegenerator.o codegenerator.o configurationreader.o ctagsreader.o datadir.o documentstyle.o elementstyle.o highlight_wrapper.o htmlgenerator.o languagedefinition.o latexgenerator.o platform_fs.o preformatter.o render.o rtfgenerator.o stringtools.o stylecolour.o svggenerator.o texgenerator.o xhtmlgenerator.o xmlgenerator.o xterm256generator.o -L/usr/lib/R/lib -lR 
installing to /home/sukumar/R/x86_64-pc-linux-gnu-library/3.3/highlight/libs 
** R 
** inst 
** preparing package for lazy loading 
** help 
*** installing help indices 
** building package indices 
** testing if installed package can be loaded 
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
    unable to load shared object '/home/sukumar/R/x86_64-pc-linux-gnu-library/3.3/highlight/libs/highlight.so': 
    /home/sukumar/R/x86_64-pc-linux-gnu-library/3.3/highlight/libs/highlight.so: undefined symbol: _ZTVN10__cxxabiv117__class_type_infoE 
Error: loading failed 
Execution halted 
ERROR: loading failed 
* removing ‘/home/sukumar/R/x86_64-pc-linux-gnu-library/3.3/highlight’ 
Warning in install.packages : 
    installation of package ‘highlight’ had non-zero exit status 
* installing *source* package ‘Rcpp’ ... 
** package ‘Rcpp’ successfully unpacked and MD5 sums checked 
** libs 
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/  -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Date.cpp -o Date.o 
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/  -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Module.cpp -o Module.o 
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/  -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rcpp_init.cpp -o Rcpp_init.o 
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/  -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c api.cpp -o api.o 
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/  -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c attributes.cpp -o attributes.o 
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/  -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c barrier.cpp -o barrier.o 
g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o Rcpp.so Date.o Module.o Rcpp_init.o api.o attributes.o barrier.o -L/usr/lib/R/lib -lR 
installing to /home/sukumar/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/libs 
** R 
** inst 
** preparing package for lazy loading 
** help 
*** installing help indices 
** building package indices 
** installing vignettes 
** testing if installed package can be loaded 
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
    unable to load shared object '/home/sukumar/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/libs/Rcpp.so': 
    /home/sukumar/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/libs/Rcpp.so: undefined symbol: _ZTVN10__cxxabiv120__si_class_type_infoE 
Error: loading failed 
Execution halted 
ERROR: loading failed 
* removing ‘/home/sukumar/R/x86_64-pc-linux-gnu-library/3.3/Rcpp’ 
Warning in install.packages : 
    installation of package ‘Rcpp’ had non-zero exit status 

The downloaded source packages are in 
‘/tmp/RtmpsPMzSK/downloaded_packages’

Quelle

2017-03-11 saint

+0

Haben Sie R über 'sudo apt-get install r-base 'installiert oder von einem anderen Rechner kopiert? Siehe hierzu [question] (http://stackoverflow.com/questions/38943764/r-error-in-dyn-loadfile-dllpath-dllpath) und [antwort] (http://stackoverflow.com/a/40603539/3022126)) – Phil

+0

Ja, habe mit sudo apt-get installieren r-base installiert und R nach der Deinstallation erneut installiert, wie in diesem http://stackoverflow.com/questions/203366644/completely-uninstall-r-linux und sogar die aufgeführten Ordner gelöscht nach dem .libs Befehl in R. Wenige Tage zuvor habe ich ein Update durchgeführt und die ggplot Installation ist mit dem gleichen Fehler auf Rcpp abgestürzt, aber alles neu installiert. Trotzdem bleibt der Fehler bestehen. – saint

Antwort

0

Diese Version von RCPP ist nicht über apt-get als binäres installiert, sondern von der Quelle: /home/sukumar/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/libs/Rcpp.so.

Die Fehlermeldung undefined symbol: _ZTVN10__cxxabiv120__si_class_type_infoE schlägt vor, dass Sie nicht übereinstimmende Compiler - und ältere und einen neueren C++ - Compiler haben.

Ich würde empfehlen, dass Sie diese Version löschen (dh tun rm -r ~/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/), und stellen Sie sicher, dass Sie keine andere Version installiert haben. Dann sollte die Installation von der Quelle gut funktionieren.

Sie haben generell die Wahl zwischen den vorgefertigten Versionen von Ubuntu 14.04. Oder Sie könnten Ubuntu auf Version 16.04 oder sogar 16.10 upgraden. Alle Versionen sollten funktionierende Rcpp-Versionen haben - und die Installation von der Quelle sollte auch gut funktionieren, wenn Sie über funktionierende und konsistente Versionen der benötigten Tools verfügen (zB g++).

Quelle

2017-03-12 07:15:53

+0

Vielen Dank für Ihre Antwort. Ich habe versucht, 6 mal mit verschiedenen Lösungen auf Google zu deinstallieren und zu installieren. Und ich habe eins und arbeite g ++. Schließlich habe ich R von der Quelle installiert und den Pfad zu dieser Version für RStudio festgelegt. Rcpp hatte einen erfolgreichen Exit bei der Installation. – saint

+0

Bitte abonnieren Sie r-sig-debian und posten Sie dort - das macht keinen Sinn. Tausende von Menschen haben die Binaries ohne Probleme verwendet. –

+0

Und natürlich benutze ich Ubuntu selbst (aber upgrade alle sechs Monate, also derzeit 16.10 auf meinen Hauptmaschinen). Dieses Zeug funktioniert einfach, also machst du irgendwo etwas Ungewöhnliches. –

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