2016-12-14 4 views
1

Ich versuche, CSV-Dateien mit Feldern von Zeitstempeln zu importieren, erscheint als: "12/08/16 13.02.22"pyspark CSV-Import mit Option Timestamp

Code:

df = sqlContext.read.format('com.databricks.spark.csv').options(header="false", timestampFormat='MM/dd/yy hh:mm:ss').schema(schema).load('/home/spark/Data/mdi_*.csv')\ 

jedoch , Bekomme ich eine seltsame java.lang.NullPointException wie unten gezeigt. Jede Hilfe würde sehr geschätzt werden!

Dank

M.

--------------------------------------------------------------------------- 
Py4JJavaError        Traceback (most recent call last) 
<ipython-input-36-3106d06b6e49> in <module>() 
----> 1 df.show() 

/home/spark/spark/python/pyspark/sql/dataframe.pyc in show(self, n, truncate) 
    285   +---+-----+ 
    286   """ 
--> 287   print(self._jdf.showString(n, truncate)) 
    288 
    289  def __repr__(self): 

/home/spark/spark/python/lib/py4j-0.10.3-src.zip/py4j/java_gateway.py in __call__(self, *args) 
    1131   answer = self.gateway_client.send_command(command) 
    1132   return_value = get_return_value(
-> 1133    answer, self.gateway_client, self.target_id, self.name) 
    1134 
    1135   for temp_arg in temp_args: 

/home/spark/spark/python/pyspark/sql/utils.pyc in deco(*a, **kw) 
    61  def deco(*a, **kw): 
    62   try: 
---> 63    return f(*a, **kw) 
    64   except py4j.protocol.Py4JJavaError as e: 
    65    s = e.java_exception.toString() 

/home/spark/spark/python/lib/py4j-0.10.3-src.zip/py4j/protocol.py in get_return_value(answer, gateway_client, target_id, name) 
    317     raise Py4JJavaError(
    318      "An error occurred while calling {0}{1}{2}.\n". 
--> 319      format(target_id, ".", name), value) 
    320    else: 
    321     raise Py4JError(

Py4JJavaError: An error occurred while calling o843.showString. 
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 16.0 failed 1 times, most recent failure: Lost task 0.0 in stage 16.0 (TID 16, localhost): java.lang.NullPointerException 
    at org.apache.spark.sql.catalyst.util.DateTimeUtils$.stringToTime(DateTimeUtils.scala:125) 
    at org.apache.spark.sql.execution.datasources.csv.CSVTypeCast$$anonfun$castTo$6.apply$mcJ$sp(CSVInferSchema.scala:272) 
    at org.apache.spark.sql.execution.datasources.csv.CSVTypeCast$$anonfun$castTo$6.apply(CSVInferSchema.scala:272) 
    at org.apache.spark.sql.execution.datasources.csv.CSVTypeCast$$anonfun$castTo$6.apply(CSVInferSchema.scala:272) 
    at scala.util.Try.getOrElse(Try.scala:79) 
    at org.apache.spark.sql.execution.datasources.csv.CSVTypeCast$.castTo(CSVInferSchema.scala:269) 
    at org.apache.spark.sql.execution.datasources.csv.CSVRelation$$anonfun$csvParser$3.apply(CSVRelation.scala:116) 
    at org.apache.spark.sql.execution.datasources.csv.CSVRelation$$anonfun$csvParser$3.apply(CSVRelation.scala:85) 
    at org.apache.spark.sql.execution.datasources.csv.CSVFileFormat$$anonfun$buildReader$1$$anonfun$apply$2.apply(CSVFileFormat.scala:128) 
    at org.apache.spark.sql.execution.datasources.csv.CSVFileFormat$$anonfun$buildReader$1$$anonfun$apply$2.apply(CSVFileFormat.scala:127) 
    at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:434) 
    at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:440) 
    at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408) 
    at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:91) 
    at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:128) 
    at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:91) 
    at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNext(Unknown Source) 
    at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43) 
    at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$8$$anon$1.hasNext(WholeStageCodegenExec.scala:370) 
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$4.apply(SparkPlan.scala:246) 
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$4.apply(SparkPlan.scala:240) 
    at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:803) 
    at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:803) 
    at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) 
    at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319) 
    at org.apache.spark.rdd.RDD.iterator(RDD.scala:283) 
    at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:70) 
    at org.apache.spark.scheduler.Task.run(Task.scala:86) 
    at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274) 
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) 
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) 
    at java.lang.Thread.run(Thread.java:745) 

Driver stacktrace: 
    at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1454) 
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1442) 
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1441) 
    at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59) 
    at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48) 
    at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1441) 
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:811) 
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:811) 
    at scala.Option.foreach(Option.scala:257) 
    at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:811) 
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1667) 
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1622) 
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1611) 
    at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48) 
    at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:632) 
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:1873) 
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:1886) 
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:1899) 
    at org.apache.spark.sql.execution.SparkPlan.executeTake(SparkPlan.scala:347) 
    at org.apache.spark.sql.execution.CollectLimitExec.executeCollect(limit.scala:39) 
    at org.apache.spark.sql.Dataset$$anonfun$org$apache$spark$sql$Dataset$$execute$1$1.apply(Dataset.scala:2193) 
    at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:57) 
    at org.apache.spark.sql.Dataset.withNewExecutionId(Dataset.scala:2546) 
    at org.apache.spark.sql.Dataset.org$apache$spark$sql$Dataset$$execute$1(Dataset.scala:2192) 
    at org.apache.spark.sql.Dataset.org$apache$spark$sql$Dataset$$collect(Dataset.scala:2199) 
    at org.apache.spark.sql.Dataset$$anonfun$head$1.apply(Dataset.scala:1935) 
    at org.apache.spark.sql.Dataset$$anonfun$head$1.apply(Dataset.scala:1934) 
    at org.apache.spark.sql.Dataset.withTypedCallback(Dataset.scala:2576) 
    at org.apache.spark.sql.Dataset.head(Dataset.scala:1934) 
    at org.apache.spark.sql.Dataset.take(Dataset.scala:2149) 
    at org.apache.spark.sql.Dataset.showString(Dataset.scala:239) 
    at sun.reflect.GeneratedMethodAccessor72.invoke(Unknown Source) 
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) 
    at java.lang.reflect.Method.invoke(Method.java:606) 
    at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:237) 
    at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357) 
    at py4j.Gateway.invoke(Gateway.java:280) 
    at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132) 
    at py4j.commands.CallCommand.execute(CallCommand.java:79) 
    at py4j.GatewayConnection.run(GatewayConnection.java:214) 
    at java.lang.Thread.run(Thread.java:745) 
Caused by: java.lang.NullPointerException 
    at org.apache.spark.sql.catalyst.util.DateTimeUtils$.stringToTime(DateTimeUtils.scala:125) 
    at org.apache.spark.sql.execution.datasources.csv.CSVTypeCast$$anonfun$castTo$6.apply$mcJ$sp(CSVInferSchema.scala:272) 
    at org.apache.spark.sql.execution.datasources.csv.CSVTypeCast$$anonfun$castTo$6.apply(CSVInferSchema.scala:272) 
    at org.apache.spark.sql.execution.datasources.csv.CSVTypeCast$$anonfun$castTo$6.apply(CSVInferSchema.scala:272) 
    at scala.util.Try.getOrElse(Try.scala:79) 
    at org.apache.spark.sql.execution.datasources.csv.CSVTypeCast$.castTo(CSVInferSchema.scala:269) 
    at org.apache.spark.sql.execution.datasources.csv.CSVRelation$$anonfun$csvParser$3.apply(CSVRelation.scala:116) 
    at org.apache.spark.sql.execution.datasources.csv.CSVRelation$$anonfun$csvParser$3.apply(CSVRelation.scala:85) 
    at org.apache.spark.sql.execution.datasources.csv.CSVFileFormat$$anonfun$buildReader$1$$anonfun$apply$2.apply(CSVFileFormat.scala:128) 
    at org.apache.spark.sql.execution.datasources.csv.CSVFileFormat$$anonfun$buildReader$1$$anonfun$apply$2.apply(CSVFileFormat.scala:127) 
    at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:434) 
    at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:440) 
    at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408) 
    at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:91) 
    at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:128) 
    at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:91) 
    at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNext(Unknown Source) 
    at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43) 
    at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$8$$anon$1.hasNext(WholeStageCodegenExec.scala:370) 
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$4.apply(SparkPlan.scala:246) 
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$4.apply(SparkPlan.scala:240) 
    at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:803) 
    at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:803) 
    at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) 
    at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319) 
    at org.apache.spark.rdd.RDD.iterator(RDD.scala:283) 
    at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:70) 
    at org.apache.spark.scheduler.Task.run(Task.scala:86) 
    at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274) 
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) 
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) 
    ... 1 more 

Antwort

1

Sind Sie sicher, dass es nicht dd/MM/yy hh:mm:ss ist?
Sie können versuchen, es manuell zu werfen und sehen, was passiert, erste timestamp als StringType im Schema angeben und dann:
df =sqlContext.read.format('com.databricks.spark.csv').options(header="false").schema(schema).load('/home/spark/Data/mdi_*.csv').select(timestamp.cast(TimestampType)