Installation von dada2 funktioniert nicht

Question

In R 3.4.0 habe ich versucht, DADA2 zu installieren. Aber es funktioniert nicht ...

> library("devtools") 
> devtools::install_github("benjjneb/dada2") 
Installation failed: Timeout was reached 

So habe ich versucht, diese (der Ordner dada2-1.4 ist in Tuto_DADA2) (I installiert RTools 3.4.0 zuerst)

> install.packages("~/Tuto_DADA2", repos = NULL, type = "source", dependencies = c("Depends", "Suggests","Imports")) 
'\\CXXXW0001\Users\RXXXAn\Tuto_DADA2' 
CMD.EXE was started with the above path as the current directory. 
UNC paths are not supported. Defaulting to Windows directory. 
'\\CXXXW0001\Users\RXXXAn\R\R-3.4.0' is not recognized as an internal or external command, 
operable program or batch file. 
Warning in install.packages : 
    running command '"//CXXXW0001/Users/RXXXAn/R/R-3.4.0/bin/x64/R" CMD INSTALL -l "\\CXXXW0001\Users\RXXXAn\R\R-3.4.0\library" "//CXXXW0001/Users/RXXXAn/Tuto_DADA2"' had status 1 
Warning in install.packages : 
    installation of package ‘//CXXXW0001/Users/RXXXAn/Tuto_DADA2’ had non-zero exit status 

Dann habe ich versucht

> install.packages("https://www.bioconductor.org/packages/release/bioc/src/contrib/dada2_1.4.0.tar.gz", repos = NULL, type="source") 
trying URL 'https://www.bioconductor.org/packages/release/bioc/src/contrib/dada2_1.4.0.tar.gz' 
Content type 'application/x-gzip' length 1709035 bytes (1.6 MB) 
downloaded 1.6 MB 

'\\CXXXW0001\Users\RXXXAn\Tuto_DADA2' 
CMD.EXE was started with the above path as the current directory. 
UNC paths are not supported. Defaulting to Windows directory. 
'\\CXXXW0001\Users\RXXXAn\R\R-3.4.0' is not recognized as an internal or external command, 
operable program or batch file. 
Warning in install.packages : 
    running command '"//CXXXW0001/Users/RXXXAn/R/R-3.4.0/bin/x64/R" CMD INSTALL -l "\\CXXXW0001\Users\RXXXAn\R\R-3.4.0\library" "C:/Users/RXXXH~1/AppData/Local/Temp/RtmpGW3jsa/downloaded_packages/dada2_1.4.0.tar.gz"' had status 1 
Warning in install.packages : 
    installation of package ‘C:/Users/RXXXH~1/AppData/Local/Temp/RtmpGW3jsa/downloaded_packages/dada2_1.4.0.tar.gz’ had non-zero exit status 

Aber weiß, ich weiß nicht, was ...

Dank zu tun!

EDIT: Ich weiß nicht, was ich getan habe, aber die Installation funktioniert, aber es gibt eine Fehlermeldung, wenn ich das Paket laden ...

> library(dada2) 
Error: package or namespace load failed for ‘dada2’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): 
aucun package nommé ‘GenomeInfoDbData’ n'est trouvé 

Und wenn ich GenomeInfoDbData zu installieren versucht :

> source("http://bioconductor.org/biocLite.R") 
Bioconductor version 3.5 (BiocInstaller 1.26.0), ?biocLite for help 
> biocLite("GenomeInfoDbData") 
BioC_mirror: https://bioconductor.org 
Using Bioconductor 3.5 (BiocInstaller 1.26.0), R 3.4.0 (2017-04-21). 
Installing package(s) ‘GenomeInfoDbData’ 
installing the source package ‘GenomeInfoDbData’ 

trying URL 'https://bioconductor.org/packages/3.5/data/annotation/src/contrib/GenomeInfoDbData_0.99.0.tar.gz' 
Content type 'application/x-gzip' length 16238792 bytes (15.5 MB) 
downloaded 15.5 MB 

'\\CXXXW0001\Users\RXXXAn\Tuto_DADA2' 
CMD.EXE was started with the above path as the current directory. 
UNC paths are not supported. Defaulting to Windows directory. 
'\\CXXXW0001\Users\RXXXAn\R\R-3.4.0' is not recognized as an internal or external command, 
operable program or batch file. 

The downloaded source packages are in 
    ‘C:\Users\RXXXAn\AppData\Local\Temp\RtmpOqOI3E\downloaded_packages’ 
Old packages: 'DelayedArray', 'GenomeInfoDb', 'GenomicRanges', 'IRanges', 'S4Vectors', 'SummarizedExperiment', 'tibble' 
Update all/some/none? [a/s/n]: 
n 
Warning messages: 
1: running command '"//CXXXW0001/Users/RXXXAn/R/R-3.4.0/bin/x64/R" CMD INSTALL -l "\\CXXXW0001\Users\RXXXAn\R\R-3.4.0\library" C:\Users\RXXXH~1\AppData\Local\Temp\RtmpOqOI3E/downloaded_packages/GenomeInfoDbData_0.99.0.tar.gz' had status 1 
2: In install.packages(pkgs = doing, lib = lib, ...) : 
    installation of package ‘GenomeInfoDbData’ had non-zero exit status 

Answer 1

Der einfachste Weg, um das Paket zu installieren, ist mit ziemlicher Sicherheit über Bioconductor zu sein, der alle Abhängigkeitsmanagement behandelt und die Notwendigkeit, etwas zu kompilieren vermeidet.

source("https://bioconductor.org/biocLite.R") 
biocLite("dada2")